Computer Science Department, Bucknell University

Links on Computational Biology for CSCI 475

Links on Computational Biology posted by members of the class.
Newest entries at the top.

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Good stuff - never say die - http://www.acm.org/crossroads/xrds4-1/genome.html
Comments: I like this article. It's clear cut. I wish we saw it earlier.
Filed by: Randy Faust Entered: Tuesday, May 12, 1998 at 15:32:06 (EDT)
This is the website of the company that produces the Sequencher program. - http://www.genecodes.com
Comments: Sequencher is the top software tool available for labs involved in DNA sequencing.
Filed by: Dustin Torsello Entered: Wednesday, December 17, 1997 at 14:08:14 (EST)
Yet another company that specializes in DNA software - http://www.biodisk.com
Comments: No comments at this time
Filed by: The Mean Genes Entered: Thursday, October 16, 1997 at 09:49:41 (EDT)
Dnastar is company that specializes in DNA software - http://www.dnastar.com
Comments: No comments at this time
Filed by: The Mean Genes Entered: Thursday, October 16, 1997 at 09:48:42 (EDT)
Compugen is software company specializing in DNA software - http://www.compugen.co.il
Comments: No comments at this time
Filed by: The Mean Genes Entered: Thursday, October 16, 1997 at 09:46:16 (EDT)
NetSci: Bioinformatics Software - http://www.awod.com/netsci/Resources/Software/Bioinform/top.html
Comments: What seems to be a nice compilation of various Bioinformatics programs and links where available.
Filed by: James J. Heck Entered: Tuesday, October 14, 1997 at 21:12:16 (EDT)
Programmable DNA Analysis System - http://www.beckman.com/biorsrch/prodinfo/genomyx/dnasep.htm
Comments: This company is ahead of ours in research and development. I think we should outsource and hire some of their people to help us.
Filed by: Randy Faust Entered: Tuesday, September 09, 1997 at 15:03:39 (EDT)
Molecular Viewer written in Java - http://www.sdsc.edu/CCMS/Proposal/node24.html#figjava
Comments: Neat interactive Molecular Viewer written in Java. Impressive.
Filed by: Dan Hyde Entered: Friday, August 01, 1997 at 15:24:04 (EDT)
SDSC Macromolecular Structure Query - http://db2.sdsc.edu/moose/moose.html
Comments: MOOSE queries the native and derived features of macromolecular structure as taken from data distributed by the Protein Data Bank (PDB).
Filed by: Dan Hyde Entered: Friday, August 01, 1997 at 15:22:36 (EDT)
GDB - Genome Data Base at Johns Hopkins - http://gdbwww.gdb.org/
Comments: Search Engine for Human Genome. See Site Map for help.
Filed by: Dan Hyde Entered: Friday, August 01, 1997 at 15:17:39 (EDT)
Lawrence Berkeley National Laboratory Human Genome Center - http://www-hgc.lbl.gov/
Comments: Genome Sequencing Center is a large-scale sequencing operation.
Filed by: Dan Hyde Entered: Friday, August 01, 1997 at 15:02:47 (EDT)
Genome Sequencing Centre, Institute of Molecular Biotechnology, Jena - http://genome.imb-jena.de/
Comments: Nice pictures of Human Chromosomes; Human Blast Search Engine
Filed by: Dan Hyde Entered: Friday, August 01, 1997 at 14:59:32 (EDT)
Genes, Genomes & Nucleotide (DNA & RNA) - http://www-sci.lib.uci.edu/HSG/GradBioscience.html#GENES
Comments: THE "UNIVERSAL" GENETIC CODE - HTML formated. TABLE OF STANDARD GENETIC CODE Molecular Biology Protocols,
Filed by: Dan Hyde Entered: Friday, August 01, 1997 at 14:53:45 (EDT)
USC Center for Computational and Experimental Genomics - http://www-hto.usc.edu/
Comments: Information resources - books, papers online, software
Filed by: Dan Hyde Entered: Friday, August 01, 1997 at 14:48:55 (EDT)
NCSA COMPUTATIONAL BIOLOGY - http://bioweb.ncsa.uiuc.edu/
Comments: The Biology Workbench provides a point and click interface for rapid access of biological databases and analysis tools. ALSO: Protein Structure ToolKit (PDF Interface)
Filed by: Dan Hyde Entered: Friday, August 01, 1997 at 14:45:56 (EDT)
The Biology Workbench on the World Wide Web - http://alfredo.wustl.edu/ismb96/abs/d9.html
Comments: Abstract of paper
Filed by: Dan Hyde Entered: Friday, August 01, 1997 at 14:24:05 (EDT)
Biological Sciences Los Alamos National Laboratory - http://www-t10.lanl.gov/BIOwelcome.html
Comments: SIGMA - Free software tool for Gene Mapping. Also, Sigma human chromosome maps based on Johns Hopkins' Genome Data Base (GDB).
Filed by: Dan Hyde Entered: Friday, August 01, 1997 at 14:20:43 (EDT)
Primer on Molecular Genetics (Department of Energy) - http://www.gdb.org/Dan/DOE/intro.html
Comments: Good introduction to Molecular Genetics
Filed by: Dan Hyde Entered: Friday, August 01, 1997 at 14:03:17 (EDT)

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